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ABSTRACT The complete genome ofPlanococcus koreensiswas obtained using Nanopore MinION sequencing after isolation from soil in Colorado. The assembled genome contains one circular contig with 3,519,105 bp, 3,606 genes, 419 pseudogenes, and 47.62% guanine-cytosine content. This discovery provides a fully assembledP. koreensisgenome available at the National Center for Biotechnology Information. 

Abstract The light environment underwater can vary dramatically over space and time, challenging the visual systems of aquatic organisms. To meet these challenges, many species shift their spectral sensitivities through changes in visual pigment chromophore and opsin expression. The red shiner (Cyprinella lutrensis) is a cyprinid minnow species that has rapidly expanded its range throughout North America and inhabits a wide range of aquatic habitats. We hypothesized that visual system plasticity has contributed to the red shiner’s success. We investigated plasticity in chromophore usage and opsin expression by collecting red shiners from three Oklahoma creeks that vary in turbidity throughout the year. We characterized the light environment by spectroradiometry, measured chromophore composition of the eyes with high performance liquid chromatography, characterized CYP27C1 enzyme function through heterologous expression, and examined ocular gene expression by RNA sequencing andde novotranscriptome assembly. We observed significantly higher proportions of the long- wavelength shifted A₂chromophore in the eyes of fish from the turbid site and in samples collected in winter, suggesting that there may be a temperature-dependent trade-off between chromophore-based spectral tuning and chromophore-related noise. Opsin expression varied between turbid and clear creeks, but did not align with light environment as expected, and the magnitude of these differences was limited compared to the differences in chromophore composition. We confirmed that red shinerCYP27C1catalyzes the conversion of A₁to A₂, but the ocular expression ofCYP27C1was not well correlated with A₂levels in the eye, suggesting conversion may be occurring outside of the eye. 

We investigate the morphologies of the Ge(001) surface that are produced by bombardment with a normally incident, broad argon ion beam at sample temperatures above the recrystallization temperature. Two previously observed kinds of topographies are seen, i.e., patterns consisting of upright and inverted rectangular pyramids, as well as patterns composed of shallow, isotropic basins. In addition, we observe the formation of an unexpected third type of pattern for intermediate values of the temperature, ion energy, and ion flux. In this type of intermediate morphology, isolated peaks with rectangular cross-sections stand above a landscape of shallow, rounded basins. We also extend past theoretical work to include a second-order correction term that comes from the curvature dependence of the sputter yield. For a range of parameter values, the resulting continuum model of the surface dynamics produces patterns that are remarkably similar to the intermediate morphologies we observe in our experiments. The formation of the isolated peaks is the result of a term that is not ordinarily included in the equation of motion, a second-order correction to the curvature dependence of the sputter yield. 

Atmospheric particulate matter (PM) in urban areas is derived from natural and anthropogenic sources, but it is difficult to identify how these various sources contribute to air quality. To characterize PM sources in an urban setting, we collected PM in three size fractions (PM2.5, PM10, and total suspended particulates, TSP) for two-week intervals from 2019 through 2021 in the Wasatch Front of northern Utah. The PM samples were analyzed for major and trace element concentrations and 87Sr/86Sr ratios. Using principal components analysis, we identified mineral dust, urban pollution, and fireworks as the primary PM sources affecting Wasatch Front air quality. Dust contributed Al, Be, Ca, Fe, Mg, Rb, Y, and REEs, which are typical components of carbonate and silicate minerals, with highest concentrations in the TSP fraction. Urban sources produced PM that was enriched in As, Cd, Mo, Pb, Sb, Se, and Tl, and fireworks smoke had high concentrations of Ba, Cr, Cu, K, Sr, and V. Dust events dominated PM chemistry during spring through fall, punctuated by fireworks smoke over the Independence Day holiday, while urban pollution dominated PM chemistry from November through February during winter inversions. 87Sr/86Sr ratios revealed that Sr was sourced from regional playas, local sediment, and fireworks. Strontium released from fireworks had relatively low 87Sr/86Sr ratios that dominated the PM isotopic composition during holidays. Sequential leaching showed that potentially harmful elements such as Se, Cd, and Cu were readily removed by weak acids, suggesting that they are readily available in the environment or through human inhalation. This is the first study to describe seasonal variations in PM chemistry in the Wasatch Front and serves as an example of investigating air quality in complex urban areas impacted by desert dust.